Family GP003149


Family ID GP003149  add to my list RDF
Family name Glutamyl/glutaminyl-tRNA synthetase family   suggest a name
Cross-reference(s) PMID:
Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs.
2203971
Family Ontology
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molecular_function
aminoacyl-tRNA ligase activity
GO:0004812 (45%) - aminoacyl-tRNA ligase activity
biological_process
glutamyl-tRNA aminoacylation
GO:0006424 (16%) - glutamyl-tRNA aminoacylation
glutaminyl-tRNA aminoacylation
GO:0006425 (19%) - glutaminyl-tRNA aminoacylation
GDP-mannose biosynthetic process
GO:0009298 (33%) - GDP-mannose biosynthetic process
tRNA aminoacylation
GO:0043039 (50%) - tRNA aminoacylation
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Glutamyl/glutaminyl-tRNA synthetase family
GP003149 (268)
2 GP016752 (101) , GP017698 (101) ,
(plant-specificity: 9%)
GP019441 (66)
3 GP043256 (101) , GP042376 (95) , GP044307 (66) ,
(plant-specificity: 16%)
GP057476 (6)
4 GP072758 (100) , GP071815 (95) , GP074042 (66) ,
(plant-specificity: 16%)
GP090022 (6)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 268
Species Count (w/o splice) Count (w/ splice)
4 4
5 5
27 27
5 7
5 5
11 11
3 3
6 6
6 6
4 4
10 10
7 8
4 6
4 4
5 5
9 11
7 8
3 3
4 4
5 5
5 5
5 6
4 4
11 11
4 13
5 5
5 13
6 6
6 6
5 8
11 11
4 4
7 7
3 3
3 4
11 15
5 5


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Mannose-6-phosphate isomerase, type I
IPR001250
Mannose-6-phosphate isomerase, type I Family 35 (93) Yes
Glutamine-tRNA synthetase, class Ib
IPR004514
Glutamine-tRNA synthetase, class Ib Family 24 (63) Yes
Glutamate-tRNA ligase, class Ib, bacterial/mitochondrial
IPR004527
Glutamate-tRNA ligase, class Ib, bacterial/mitochondrial Family 16 (43) Yes
Mannose-6-phosphate isomerase
IPR016305
Mannose-6-phosphate isomerase Family 33 (88) Yes
Glutamine-tRNA ligase, bacterial
IPR022861
Glutamine-tRNA ligase, bacterial Family 1 (1) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001250 IPR016305


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
268 233 (87%) 185 (69%) [49; 452; 1856] ~496 2704 220