Family GP000853


Family ID GP000853  add to my list RDF
Family name Spc97 / spc98 family   suggest a name
Cross-reference(s) PMID:
Reconstitution and characterization of budding yeast gamma-tubulin complex.
11950928
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Spc97 / spc98 family (plant-specificity: 19%)
GP000853 (362)
2
Gamma tubulin complex protein 3 subfamily (plant-specificity: 19%)
GP019496 (85) ,
(plant-specificity: 11%)
GP019675 (74) ,
(plant-specificity: 99%)
GP019495 (68) , GP020994 (65) ,
(plant-specificity: 9%)
GP020580 (63) , GP114371 (4) , GP115862 (3)
3 GP044376 (85) , GP044580 (74) , GP046044 (65) , GP044744 (64) ,
(plant-specificity: 9%)
GP045584 (63) , GP126202 (4) , GP128318 (3)
4 GP073939 (85) , GP074157 (74) , GP075712 (65) ,
(plant-specificity: 99%)
GP076686 (63) , GP075230 (63) , GP141671 (4) , GP144556 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 362
Species Count (w/o splice) Count (w/ splice)
2 2
5 5
32 32
12 12
4 4
18 18
6 6
6 6
8 8
7 7
9 9
7 10
6 7
7 7
5 5
13 16
7 9
8 8
4 4
5 5
5 5
7 8
9 9
21 21
7 24
5 5
9 14
5 5
11 11
7 8
16 16
11 11
6 6
5 5
5 6
16 21
7 7


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Spc97/Spc98
IPR007259
Spc97/Spc98 Family 81 (293) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR007259


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
362 323 (89%) 226 (62%) [36; 708; 2638] ~661 4240 271