Family GP000809


Family ID GP000809  add to my list RDF
Family name Spermidine synthase family   suggest a name
Cross-reference(s) PMID:
Molecular cloning of plant spermidine synthases.
9517003
Family Ontology
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molecular_function
protein binding
GO:0005515 (1%) - protein binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Spermidine synthase family
GP000809 (356)
2 GP016174 (349) ,
(plant-specificity: 100%)
GP026104 (7) , GP028560 (4)
3 GP040837 (246) , GP042450 (103) ,
(plant-specificity: 100%)
GP051219 (7) , GP055545 (4)
4 GP070244 (246) , GP071888 (103) ,
(plant-specificity: 100%)
GP081930 (6) , GP087431 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 356
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
15 15
7 10
4 4
8 8
6 6
8 8
8 8
9 9
7 7
4 10
4 8
3 3
5 5
6 15
5 6
4 4
7 7
9 9
5 5
4 11
3 3
13 13
5 20
8 8
7 15
5 5
11 11
8 15
22 22
12 12
17 17
8 8
6 7
19 30
8 8


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Spermidine/spermine synthases family
IPR001045
Spermidine/spermine synthases family Family 88 (315) No
Putrescine N-methyltransferase
IPR025803
Putrescine N-methyltransferase Family 1 (1) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001045


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
356 284 (80%) 238 (67%) [38; 335; 1068] ~307 2617 245