Family GP000837


Family ID GP000837  add to my list RDF
Family name pyrimidine 5-nucleotidase family   suggest a name
Synonym(s) Haloacid dehalogenase-like hydrolase
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
pyrimidine 5-nucleotidase family
GP000837 (353)
2 GP015786 (352)
3 GP040437 (352)
4 GP069877 (349) , GP144587 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 353
Species Count (w/o splice) Count (w/ splice)
1 1
6 6
2 4
1 1
22 22
3 3
11 11
11 11
12 12
5 5
5 6
5 7
8 8
9 9
7 18
6 7
4 4
6 6
5 5
4 4
5 7
6 6
11 11
8 28
5 5
8 19
5 5
10 10
7 15
13 13
10 10
13 14
7 7
8 12
16 33
8 8


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Protein of unknown function DUF1036
IPR009380
Protein of unknown function DUF1036 Family 1 (2) Yes
Pyrimidine 5-nucleotidase
IPR010237
Pyrimidine 5-nucleotidase Family 76 (268) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
HAD-like domain
IPR023214
HAD-like domain Domain 90 (318) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR023214 IPR010237


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
353 273 (77%) 252 (71%) [54; 275; 887] ~259 2121 219


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
353 252 (71%) 1.54128 1.49784 0.338332



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