Family GP001279


Family ID GP001279  add to my list RDF
Family name Gamma thionin family   suggest a name
Synonym(s) Defense response
Cross-reference(s) PMID:
Pathogen-induced systemic activation of a plant defensin gene in Arabidopsis follows a salicylic acid-independent pathway.
8989885 PMID:
A new family of basic cysteine-rich plant antifungal proteins from Brassicaceae species.
8422949
Curation status ?
Found in Spermatophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Gamma thionin family (plant-specificity: 98%)
GP001279 (354)
2
Gamma Purothionin subfamily
GP016595 (234) ,
(plant-specificity: 100%)
GP023094 (51) ,
(plant-specificity: 100%)
GP026993 (14) ,
(plant-specificity: 100%)
GP110550 (12) ,
(plant-specificity: 100%)
GP112091 (7) ,
(plant-specificity: 100%)
GP029155 (6) ,
(plant-specificity: 100%)
GP113105 (7) ,
(plant-specificity: 100%)
GP027473 (5) , GP038699 (4) , GP116155 (3) , GP117229 (3) , GP117650 (2)
3 GP041230 (229) ,
(plant-specificity: 100%)
GP049791 (46) ,
(plant-specificity: 100%)
GP053507 (14) ,
(plaft-spacIficity: 100%)
GP120818 (12) ,
(plant-specificity: 100%)
GP122705 (7) ,
(plant-specificity: 100%)
GP122891 (7) ,
(plant-specificity: 100%)
GP056244 (6) ,
(plant-specificity: 100%)
GP054062 (5) , GP068131 (4) , GP128817 (3) , GP128908 (3) ,
(plant-specificity: 100%)
GP054864 (5) , GP130360 (3) , GP130869 (2)
4 GP070855 (218) ,
(plant-specificity: 100%)
GP080088 (39) ,
(plant-specificity: 100%)
GP084862 (14) ,
(plant-specificity: 100%)
GP134713 (11) ,
(plant-specificity: 100%)
GP137084 (7) ,
(plant-specificity: 100%)
GP082613 (6) ,
(plant-specificity: 100%)
GP137743 (6) ,
(plant-specificity: 100%)
GP088193 (6) ,
(plant-specificity: 100%)
GP085465 (5) ,
(plant-specificity: 100%)
GP139702 (5) ,
(plant-specificity: 100%)
GP086646 (5) , GP103678 (4) , GP102919 (4) , GP145325 (3) , GP145458 (3) , GP145474 (3) , GP147394 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 354
Species Count (w/o splice) Count (w/ splice)
7 7
1 1
5 5
3 3
1 1
12 12
11 12
15 15
22 22
22 26
11 11
8 8
12 12
32 32
3 3
16 16
2 2
6 6
12 13
8 8
4 6
3 3
6 6
5 5
27 27
2 2
52 52
4 4
12 12
10 14
8 8


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Gamma thionin
IPR008176
Gamma thionin Family 93 (329) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Knottin, scorpion toxin-like
IPR003614
Knottin, scorpion toxin-like Domain 78 (276) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR008176 IPR003614


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
354 342 (97%) 341 (96%) [35; 79; 365] ~82 731 42


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
354 341 (96%) 1.96208 1.94031 0.573821



for (default: all):
Species



(click on the button above to get your homolog prediction list)