Family GP000806


Family ID GP000806  add to my list RDF
Family name ferredoxin [2fe-2s], plant specific family   suggest a name
Synonym(s) Apoferredoxin
Cross-reference(s) PMID:
The map-based sequence of the rice genome.
16100779 PMID:
Amino acid sequences of ferredoxins from rice cultivars, japonica and indica.
2771933
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
ferredoxin [2fe-2s], plant specific family (plant-specificity: 9%)
GP000806 (356)
2 GP015938 (352) , GP031755 (3)
3 GP040586 (279) , GP044788 (73) , GP059668 (3)
4 GP070030 (272) , GP074394 (73) ,
(plant-specificity: 14%)
GP137113 (7) , GP092495 (3) , GP145655 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 356
Species Count (w/o splice) Count (w/ splice)
4 4
8 8
40 40
9 10
6 6
6 6
5 5
8 8
8 8
7 7
6 6
7 11
10 10
10 10
9 9
13 16
9 9
6 6
9 9
8 8
3 3
6 7
4 4
8 8
10 17
4 4
12 29
9 9
10 10
6 7
9 9
4 4
10 10
6 6
7 8
14 17
8 8


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Phthalate dioxygenase reductase
IPR000951
Phthalate dioxygenase reductase Family 1 (2) Yes
Methane/phenol/toluene hydroxylase
IPR003430
Methane/phenol/toluene hydroxylase Family 1 (1) Yes
Phenol hydroxylase
IPR006756
Phenol hydroxylase Family 1 (1) Yes
Ferredoxin [2Fe-2S], plant
IPR010241
Ferredoxin [2Fe-2S], plant Family 70 (248) No
Phenol hydroxylase subunit
IPR010353
Phenol hydroxylase subunit Family 1 (1) Yes
Phenylacetate-CoA oxygenase/reductase, PaaK subunit
IPR011884
Phenylacetate-CoA oxygenase/reductase, PaaK subunit Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
2Fe-2S ferredoxin-type domain
IPR001041
2Fe-2S ferredoxin-type domain Domain 90 (321) No
2Fe-2S ferredoxin, iron-sulphur binding site
IPR006058
2Fe-2S ferredoxin, iron-sulphur binding site Binding_site 54 (192) No
Beta-grasp domain
IPR012675
Beta-grasp domain Domain 91 (324) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR006058 IPR001041 IPR012675 IPR010241


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
356 317 (89%) 310 (87%) [29; 151; 1339] ~158 2063 93


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
356 310 (87%) 0.899805 0.595628 0.516684



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