Family GP001257


Family ID GP001257  add to my list RDF
Family name Nitrate transporter, major facilitator family   suggest a name
Synonym(s) Nitrate transmembrane transporter
Cross-reference(s) PMID:
Mapping of the nitrate-assimilation gene cluster (crnA-niiA-niaD) and characterization of the nitrite reductase gene (niiA) in the opportunistic fungal pathogen Aspergillus fumigatus.
9508795
Family Ontology
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molecular_function
nitrite transmembrane transporter activity
GO:0015113 (2%) - nitrite transmembrane transporter activity
biological_process
nitrite transport
GO:0015707 (2%) - nitrite transport
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Nitrate transporter, major facilitator family (plant-specificity: 30%)
GP001257 (356)
2 GP016295 (208) , GP018623 (89) ,
(plant-specificity: 100%)
GP020993 (54) , GP113151 (5)
3 GP040923 (208) ,
(plant-specificity: 100%)
GP046042 (54) ,
(plant-specificity: 91%)
GP045926 (53) ,
(plant-specificity: 100%)
GP048634 (36) , GP124463 (5)
4 GP070327 (208) ,
(plant-specificity: 100%)
GP075708 (54) ,
(plant-specificity: 91%)
GP075568 (53) ,
(plant-specificity: 100%)
GP078714 (36) , GP139245 (5)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 356
Species Count (w/o splice) Count (w/ splice)
1 1
7 7
17 17
11 15
3 3
6 6
5 5
8 8
8 8
6 6
6 6
6 8
9 9
10 10
10 10
11 14
7 8
8 8
12 12
9 9
9 9
11 15
8 8
18 18
12 15
10 10
11 19
9 9
10 10
6 7
12 12
9 9
8 9
5 5
6 6
15 18
7 7


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Nitrate transporter
IPR004737
Nitrate transporter Family 2 (8) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Major facilitator superfamily domain, general substrate transporter
IPR016196
Major facilitator superfamily domain, general substrate transporter Domain 53 (187) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR016196


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
356 326 (92%) 187 (53%) [54; 428; 2055] ~418 3199 297