Family GP000854


Family ID GP000854  add to my list RDF
Family name ER lumen protein retaining receptor family   suggest a name
Cross-reference(s) PMID:
The Arabidopsis endoplasmic reticulum retention receptor functions in yeast.
8248265
Family Ontology
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molecular_function
ER retention sequence binding
GO:0046923 (88%) - ER retention sequence binding
biological_process
protein retention in ER lumen
GO:0006621 (88%) - protein retention in ER lumen
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
ER lumen protein retaining receptor family
GP000854 (355)
2 GP016718 (355)
3 GP041321 (199) , GP041500 (156)
4 GP070778 (199) , GP070915 (156)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 355
Species Count (w/o splice) Count (w/ splice)
1 1
4 4
26 26
6 9
4 4
7 7
6 6
13 13
7 7
9 9
6 6
5 8
5 6
4 4
5 5
7 16
4 4
6 6
8 8
8 8
8 8
7 7
5 5
18 18
12 27
7 7
8 16
6 6
13 13
8 15
15 15
10 10
12 12
6 6
7 7
16 20
6 6


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
ER lumen protein retaining receptor
IPR000133
ER lumen protein retaining receptor Family 88 (314) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000133


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
355 304 (86%) 282 (79%) [43; 216; 638] ~227 1656 205


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
355 282 (79%) 1.36715 0.801703 0.961188



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Species



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