Family GP000813


Family ID GP000813  add to my list RDF
Family name Alpha-hydroxy acid dehydrogenase, FMN-dependent family   suggest a name
Synonym(s) Peroxisomal (S)-2-hydroxy-acid oxidase GLO
Cross-reference(s) PMID:
Oxalate accumulation and regulation is independent of glycolate oxidase in rice leaves.
16595582 PMID:
Inducible antisense suppression of glycolate oxidase reveals its strong regulation over photosynthesis in rice.
19264754 PMID:
Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms.
17951448 PMID:
Proteomic analysis of leaf peroxisomal proteins in greening cotyledons of Arabidopsis thaliana.
12154131
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Alpha-hydroxy acid dehydrogenase, FMN-dependent family
GP000813 (353)
2 GP015946 (353)
3 GP040594 (353)
4 GP070038 (350) , GP085511 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 353
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
9 9
7 21
2 2
8 8
2 2
8 8
4 4
7 7
5 5
7 14
4 4
3 3
6 6
7 24
7 9
2 2
7 7
8 8
4 4
5 14
3 3
21 21
10 48
5 5
6 28
6 6
8 8
4 10
8 8
4 4
16 16
4 4
3 3
14 23
3 3


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Alpha-hydroxy acid dehydrogenase, FMN-dependent
IPR012133
Alpha-hydroxy acid dehydrogenase, FMN-dependent Family 90 (319) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Aldolase-type TIM barrel
IPR013785
Aldolase-type TIM barrel Domain 95 (335) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR013785
FMN-dependent alpha-hydroxy acid dehydrogenase, active site
IPR008259 IPR012133
FMN-dependent dehydrogenase
IPR000262



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Species
Information to display
?


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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
353 229 (65%) 185 (52%) [41; 365; 1005] ~313 1936 340