Family GP003666


Family ID GP003666  add to my list RDF
Family name Thylakoid lumenal 17.9 kDa family   suggest a name
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Thylakoid lumenal 17.9 kDa family (plant-specificity: 19%)
GP003666 (351)
2 GP015867 (300) ,
(plant-specificity: 30%)
GP020438 (49)
3 GP040517 (300) ,
(plant-specificity: 30%)
GP045433 (49)
4 GP070442 (198) , GP072273 (100) , GP075063 (47) ,
(plant-specificity: 80%)
GP137835 (6)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 351
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
2 2
2 2
3 3
6 6
8 8
12 12
12 12
14 14
7 7
10 10
8 10
10 10
10 10
15 16
8 8
10 10
9 9
10 10
6 6
11 11
9 9
7 7
15 20
7 7
12 17
8 8
11 11
7 8
16 16
10 10
8 8
7 7
10 10
22 22
13 13


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Xylan biosynthesis protein IRX15/IRX15L
IPR006514
Xylan biosynthesis protein IRX15/IRX15L Family 73 (257) No
Putative polysaccharide biosynthesis protein
IPR021148
Putative polysaccharide biosynthesis protein Family 82 (287) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR021148 IPR006514


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
351 337 (96%) 319 (91%) [55; 293; 1691] ~282 3204 151


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
351 319 (91%) 1.9043 1.64277 0.992732



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