Family GP000059


Family ID GP000059  add to my list RDF
Family name F-box related group   suggest a name
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
F-box related group (plant-specificity: 30%)
GP000059 (2135)
2 GP015965 (540) , GP016754 (202) , GP016770 (292) ,
F-box family
GP016275 (148) , GP017950 (104) ,
(plant-specificity: 9%)
GP019031 (95) , GP019286 (91) ,
(plant-specificity: 19%)
GP018868 (83) , GP018827 (80) ,
(plant-specificity: 9%)
GP018773 (71) , GP018839 (66) ,
(plant-specificity: 22%)
GP020139 (67) ,
Phosphoribulokinase/uridine kinase family 1
GP021657 (62) ,
(plant-specificity: 19%)
GP021076 (53) ,
(plant-specificity: 9%)
GP022319 (51) ,
(plant-specificity: 60%)
GP109368 (46) , GP022324 (43) , GP110410 (14) ,
(plant-specificity: 85%)
GP112467 (6) ,
(plant-specificity: 50%)
GP037129 (5) , GP115708 (3)
3 GP041521 (331) , GP042178 (186) , GP041903 (150) , GP041399 (292) , GP040861 (146) , GP042681 (104) ,
(plant-specificity: 9%)
GP044119 (95) , GP044133 (91) , GP043638 (81) , GP043593 (80) , GP043317 (69) ,
(plant-specificity: 22%)
GP045092 (67) , GP043604 (66) , GP046755 (62) , GP046873 (59) ,
(plant-specificity: 19%)
GP046132 (53) ,
(plant-specificity: 9%)
GP047517 (51) ,
(plant-specificity: 60%)
GP119163 (46) , GP047524 (43) , GP120438 (14) ,
(plant-specificity: 85%)
GP051581 (6) ,
(plant-specificity: 50%)
GP066212 (5) ,
(plant-specificity: 100%)
GP058479 (5) ,
(plant-specificity: 100%)
GP053662 (6) , GP128029 (3) , GP128176 (4) , GP055531 (3)
4 GP069951 (292) , GP071342 (150) , GP070963 (143) , GP070266 (140) , GP074058 (136) , GP072152 (104) , GP073653 (95) , GP073666 (86) , GP073145 (81) , GP073351 (80) ,
(plant-specificity: 40%)
GP132374 (74) , GP073285 (69) , GP074713 (67) , GP132404 (66) , GP076524 (62) , GP076653 (59) ,
(plant-specificity: 19%)
GP075808 (53) ,
(plant-specificity: 9%)
GP077379 (51) ,
(plant-specificity: 19%)
GP075896 (46) , GP077387 (43) ,
(plant-specificity: 44%)
GP132627 (39) , GP076876 (36) , GP078439 (23) ,
(plant-specificity: 19%)
GP133476 (17) , GP084051 (16) , GP133942 (14) ,
(plant-specificity: 100%)
GP082876 (9) ,
(plant-specificity: 85%)
GP136832 (7) , GP136838 (7) ,
(plant-specificity: 66%)
GP137809 (6) ,
(plant-specificity: 85%)
GP082389 (6) ,
(plant-specificity: 100%)
GP139581 (5) ,
(plant-specificity: 50%)
GP100703 (5) , GP085871 (4) , GP141744 (4) , GP144001 (3) , GP145456 (3) , GP087398 (3) , GP145462 (3) , GP091211 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 2135
Species Count (w/o splice) Count (w/ splice)
4 4
33 33
5 5
44 56
28 28
95 95
29 29
53 53
56 56
48 48
50 50
47 76
39 47
36 36
37 37
51 85
38 41
36 36
50 50
49 49
30 30
34 39
33 33
91 91
56 122
42 42
54 100
37 37
53 53
30 42
93 93
64 64
225 229
38 38
41 49
83 121
38 38


Information to display




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No IPR family


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IPR Annotation Type % Occurence Specificity
Leucine-rich repeat, cysteine-containing subtype
IPR006553
Leucine-rich repeat, cysteine-containing subtype Repeat 63 (1341) No

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Clustering
 



Close Representative InterPro domains - Consensus schema
IPR006553


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