Family GP000825


Family ID GP000825  add to my list RDF
Family name Villin / gelsolin family.   suggest a name
Synonym(s) Villin
Cross-reference(s) PMID:
Villin-like actin-binding proteins are expressed ubiquitously in Arabidopsis.
10631247 PMID:
Preparation and characterization of pig plasma and platelet gelsolins.
3023087
Family Ontology
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biological_process
actin filament bundle assembly
GO:0051017 (1%) - actin filament bundle assembly
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Villin / gelsolin family.
GP000825 (348)
2 GP015735 (348)
3 GP040390 (348)
4 GP069829 (348)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 348
Species Count (w/o splice) Count (w/ splice)
2 2
4 5
1 1
18 18
3 3
17 17
15 15
13 13
10 10
5 8
6 7
6 6
7 7
12 18
6 6
9 9
4 4
7 7
4 4
5 8
3 3
10 10
7 22
5 5
5 23
3 3
13 13
5 18
8 8
14 14
10 10
7 7
5 6
18 33
5 5


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Villin/Gelsolin
IPR007122
Villin/Gelsolin Family 84 (294) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Villin headpiece
IPR003128
Villin headpiece Domain 64 (223) No
Gelsolin domain
IPR007123
Gelsolin domain Domain 83 (289) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR007123 IPR003128 IPR007122


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
348 272 (78%) 176 (51%) [50; 904; 1152] ~706 3265 749