Family GP001091


Family ID GP001091  add to my list RDF
Family name Transcription elongation factor, iis type family   suggest a name
Synonym(s) Tfiis family
Cross-reference(s) PMID:
The transcription elongation factor TFIIS is a component of RNA polymerase II preinitiation complexes.
17913884
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Transcription elongation factor, iis type family (plant-specificity: 30%)
GP001091 (362)
2 GP017356 (133) , GP018229 (69) ,
(plant-specificity: 9%)
GP021203 (56) ,
DNA-directed RNA polymerase III subunit C11 family (plant-specificity: 11%)
GP021455 (51) ,
(plant-specificity: 100%)
GP109561 (34) ,
(plant-specificity: 100%)
GP025167 (6) , GP028064 (4) , GP114258 (4)
3 GP042456 (110) , GP043385 (69) ,
(plant-specificity: 9%)
GP046269 (56) , GP046542 (44) ,
(plant-specificity: 100%)
GP052839 (34) ,
(plant-specificity: 12%)
GP120420 (17) , GP122751 (7) ,
(plant-specificity: 100%)
GP051779 (6) ,
(plant-specificity: 98%)
GP052149 (6) , GP054945 (4) , GP128587 (3)
4 GP072283 (110) , GP073127 (69) , GP075960 (54) , GP076269 (44) ,
(plant-specificity: 100%)
GP081870 (32) ,
(plant-specificity: 12%)
GP133471 (17) , GP136882 (7) ,
(plant-specificity: 98%)
GP083141 (6) ,
(plant-specificity: 100%)
GP082594 (6) , GP086734 (4) , GP144946 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 362
Species Count (w/o splice) Count (w/ splice)
5 5
5 5
18 18
7 8
5 5
12 12
7 7
12 12
10 10
6 6
8 8
7 8
4 4
6 6
5 5
6 9
6 6
6 6
5 5
7 7
7 7
20 22
25 25
26 26
9 25
6 6
10 14
8 8
11 11
4 5
17 17
5 5
10 10
4 4
4 5
14 16
4 4


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Transcription factor S/DNA-directed RNA polymerase subunit M
IPR006288
Transcription factor S/DNA-directed RNA polymerase subunit M Family 1 (4) Yes
Transcription elongation factor, TFIIS
IPR006289
Transcription elongation factor, TFIIS Family 17 (63) Yes
Transcription elongation factor, TFIIS-related
IPR016492
Transcription elongation factor, TFIIS-related Family 22 (81) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



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Species
Information to display
?


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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
362 331 (91%) 220 (61%) [24; 315; 1373] ~385 2983 114