Family GP001332


Family ID GP001332  add to my list RDF
Family name Trna-dihydrouridine synthase   suggest a name
Synonym(s) Dihydrouridine synthase, dus
Family Ontology
Close Hide
molecular_function
tRNA dihydrouridine synthase activity<div>,!­- END go/go_tooltip.tt --> GO:0017150 (50%) - tRNA dihydrouridine synthase activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Trna-dihydrouridine synthase (plant-specificity: 9%)
GP001332 (328)
2 GP109007 (109) ,
(plant-specificity: 22%)
GP019493 (89) ,
TRNA-dihydrouridine synthase 2 subfamily (plant-specificity: 9%)
GP019371 (68) ,
(plant-specificity: 11%)
GP020992 (62)
3 GP118810 (109) , GP044374 (87) , GP044234 (68) ,
(plant-specificity: 11%)
GP046041 (62)
4 GP132298 (101) , GP073938 (87) , GP073775 (68) ,
(plant-specificity: 11%)
GP075707 (62) , GP136278 (8)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 328
Species Count (w/o splice) Count (w/ splice)
2 2
8 8
57 57
10 11
5 5
10 10
6 6
5 5
4 4
3 3
7 7
4 6
4 9
5 5
4 4
4 12
4 4
5 5
label class="one-line"> Solanum tuberosum 7 7
7 7
5 5
5 8
6 6
13 13
8 30
6 6
5 10
5 5
6 6
4 6
12 12
6 6
10 10
5 5
5 5
10 13
5 5


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
tRNA-dihydrouridine synthase
IPR001269
tRNA-dihydrouridine synthase Family 82 (269) No
tRNA-dihydrouridine synthase, TIM-barrel, NifR3
IPR004652
tRNA-dihydrouridine synthase, TIM-barrel, NifR3 Family 1 (1) Yes
tRNA-dihydrouridine synthase, TIM-barrel, YjbN
IPR004653
tRNA-dihydrouridine synthase, TIM-barrel, YjbN Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Aldolase-type TIM barrel
IPR013785
Aldolase-type TIM barrel Domain 85 (280) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR013785
tRNA-dihyd2ouriDind synthase, conserved site
IPR018517 IPR001269



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
328 276 (84%) 223 (68%) [46; 365; 826] ~363 2078 151