Family GP001187


Family ID GP001187  add to my list RDF
Family name Eukaryotic translation initiation factor SUI1 family   suggest a name
Comment
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Eukaryotic translation initiation factor SUI1 family
GP001187 (343)
2 GP016185 (219) , GP020669 (63) , GP020833 (58)
3 GP040817 (219) ,
(plant-specificity: 9%)
GP045680 (59) , GP045865 (58)
4 GP070230 (219) , GP075333 (59) , GP075506 (58)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 343
Species Count (w/o splice) Count (w/ splice)
1 1
3 3
10 10
5 5
6 6
16 16
7 7
12 12
8 8
8 8
7 7
5 12
6 9
6 6
5 5
8 17
6 8
9 9
9 9
7 7
7 7
6 12
4 4
5 5
12 30
5 5
9 17
5 5
14 14
5 7
16 16
10 10
7 8
6 6
7 7
13 17
8 8


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Translation initiation factor SUI1
IPR001950
Translation initiation factor SUI1 Domain 57 (196) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001950


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
343 283 (83%) 252 (73%) [50; 116; 1562] ~304 2680 62




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Species



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