Family GP000685


Family ID GP000685  add to my list RDF
Family name Vacuolar proton-atpase family   suggest a name
Synonym(s) Atpase, v0 complex, proteolipid subunit c , v-type h+-transporting atpase, vacuolar h(+)-atpase v0
Cross-reference(s) PMID:
A simple nomenclature for a complex proton pump: VHA genes encode the vacuolar H(+)-ATPase.
11950611 PMID:
Several distinct genes encode nearly identical to 16 kDa proteolipids of the vacuolar H(+)-ATPase from Arabidopsis thaliana.
7579175
Family Ontology
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cellular_component
proton-transporting two-sector ATPase complex, proton-transporting domain
GO:0033177 (84%) - proton-transporting two-sector ATPase complex, proton-transporting domain
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Vacuolar proton-atpase family (plant-specificity: 9%)
GP000685 (346)
2 GP016050 (343) , GP116390 (3)
3 GP040703 (261) , GP043181 (80) , GP129197 (3)
4 GP070131 (261) , GP072685 (80) , GP145895 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 346
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
41 41
9 10
3 3
13 13
3 3
13 13
9 9
10 10
7 7
6 8
5 5
4 4
5 5
12 13
5 5
5 5
6 6
9 9
11 11
7 9
5 5
11 11
10 24
5 5
8 16
5 5
18 18
5 6
17 17
4 4
8 8
4 4
6 6
14 18
6 6


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
V-ATPase proteolipid subunit
IPR000245
V-ATPase proteolipid subunit Family 82 (282) No
V-ATPase proteolipid subunit C, eukaryotic
IPR011555
V-ATPase proteolipid subunit C, eukaryotic Family 64 (223) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
V-ATPase proteolipid subunit C-like domain
IPR002379
V-ATPase proteolipid subunit C-like domain Domain 84 (289) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002379 IPR000245 IPR011555


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
346 313 (90%) 287 (83%) [38; 166; 455] ~162 973 144


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
346 287 (83%) 0.828002 0.295347 0.689932



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