Family GP000851


Family ID GP000851  add to my list RDF
Family name Aconitase / isopropylmalate dehydratase family   suggest a name
Cross-reference(s) PMID:
Structure, genomic organization, and expression of the Arabidopsis thaliana aconitase gene. Plant aconitase show significant homology with mammalian iron-responsive element-binding protein.
7713917
Family Ontology
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molecular_function
aconitate hydratase activity
GO:0003994 (3%) - aconitate hydratase activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Aconitase / isopropylmalate dehydratase family
GP000851 (342)
2
Aconitase/Iron regulatory protein subfamily
GP016338 (214) ,
Homoaconitase/3-isopropylmalate dehydratase subfamily
GP017787 (108) ,
Aconitase B, bacterial subfamily
GP032591 (18)
3 GP040966 (214) , GP042465 (108) , GP060763 (18)
4 GP070371 (211) , GP071908 (92) , GP094019 (18) , GP133598 (16) , GP145101 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 342
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
31 31
5 5
4 4
15 15
4 4
6 6
5 5
6 6
8 8
5 7
3 5
4 4
5 5
14 27
6 7
3 3
8 8
4 4
5 5
5 6
4 4
22 22
11 23
7 7
8 13
8 8
8 8
4 8
15 15
17 17
12 12
4 4
4 4
18 22
6 6


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Aconitase B, bacterial
IPR004406
Aconitase B, bacterial Family 3 (10) Yes
Aconitase, mitochondrial-like
IPR006248
Aconitase, mitochondrial-like Family 1 (2) Yes
Aconitase/iron regulatory protein 2
IPR006249
Aconitase/iron regulatory protein 2 Family 38 (131) Yes
Homoaconitase/3-isopropylmalate dehydratase, large subunit
IPR006251
Homoaconitase/3-isopropylmalate dehydratase, large subunit Family 13 (44) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha
IPR001030
Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha Domain 86 (293) No
Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3
IPR015931
Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 Domain 83 (284) No
Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2
IPR015932
Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 Domain 71 (242) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
Aconitase/3-isopropylmalate dehydratase, swivel
IPR015928 IPR001030 IPR006249
Aconitase family, 4Fe-4S cluster binding site
IPR018136 IPR015932 IPR015931



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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
342 298 (87%) 227 (66%) [44; 668; 2025] ~643 3882 331