Family GP000721


Family ID GP000721  add to my list RDF
Family name Methyladenine glycosylase   suggest a name
Synonym(s) Methyltransferase-like
Family Ontology
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molecular_function
DNA-3-methyladenine glycosylase activity
GO:0008725 (76%) - DNA-3-methyladenine glycosylase activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Methyladenine glycosylase
GP000721 (344)
2 GP016019 (286) , GP020866 (52) , GP027962 (4)
3 GP040659 (286) , GP045903 (52) , GP054803 (4)
4 GP070155 (286) , GP132503 (52) , GP086555 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 344
Species Count (w/o splice) Count (w/ splice)
2 2
1 1
3 3
4 4
5 5
6 6
4 4
11 11
9 9
8 8
7 7
7 11
7 8
6 6
7 7
9 15
7 7
7 7
8 8
10 10
6 6
8 10
8 8
11 11
9 35
7 7
13 25
6 6
12 12
5 6
12 12
7 7
11 11
7 7
8 10
17 22
10 10


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Methyladenine glycosylase
IPR005019
Methyladenine glycosylase Family 76 (261) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
DNA glycosylase
IPR011257
DNA glycosylase Domain 77 (265) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011257 IPR005019


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
344 285 (83%) 266 (77%) [38; 323; 1135] ~314 1911 168


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
344 266 (77%) 2.62357 2.33162 0.929216



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