Family GP000150


Family ID GP000150  add to my list RDF
Family name C2C2 transcription factor family   suggest a name
Synonym(s) GATA and co-like
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
C2C2 transcription factor family (plant-specificity: 85%)
GP000150 (1938)
2 GP015744 (537) , GP015686 (453) , GP015834 (275) , GP018167 (113) , GP016205 (210) , GP016056 (236) ,
(plant-specificity: 100%)
GP020407 (69) ,
(plant-specificity: 100%)
GP023581
(plant-specificity: 100%)
GP113122 (5) ,
(plant-specificity: 100%)
GP028002 (6) , GP114244 (4) , GP116259 (3)
3 GP040470 (410) , GP040612 (333) , GP040481 (255) , GP040951 (239) , GP040868 (174) , GP042716 (117) , GP042853 (105) , GP042039 (120) ,
(plant-specificity: 100%)
GP047480 (59) ,
(plant-specificity: 100%)
GP119520 (36) ,
(plant-specificity: 100%)
GP049917 (19) ,
(plant-specificity: 100%)
GP048651 (10) ,
(plant-specificity: 100%)
GP121709 (9) ,
(plant-specificity: 98%)
GP122229 (11) ,
(plant-specificity: 100%)
GP124400 (5) ,
(plant-specificity: 100%)
GP124619 (5) , GP125966 (4) , GP126021 (4) , GP128322 (3) , GP128336 (3) , GP057202 (3) , GP056834 (3) , GP129012 (3)
4 GP070225 (360) , GP071346 (324) , GP070758 (250) , GP071476 (177) , GP070432 (140) , GP072193 (117) , GP071922 (108) , GP072344 (105) ,
(plant-specificity: 100%)
GP076933 (59) ,
(plant-specificity: 100%)
GP132789 (29) ,
(plant-specificity: 100%)
GP079854 (24) ,
(plant-specificity: 94%)
GP133266 (19) ,
(plant-specificity: 100%)
GP079500 (18) ,
(plant-specificity: 91%)
GP078735 (15) ,
(plant-specificity: 100%)
GP081154 (12) ,
(plant-specificity: 100%)
GP134629 (11) ,
(plant-specificity: 100%)
GP079794 (10) ,
(plant-specificity: 98%)
GP134955 (10) ,
(plant-specificity: 94%)
GP134984 (10) ,
(plant-specificity: 100%)
GP135374 (9) ,
(plant-specificity: 90%)
GP135442 (9) ,
(plant-specificity: 100%)
GP135469 (9) ,
(plant-specificity: 100%)
GP136708 (7) ,
(plant-specificity: 100%)
GP136788 (7) ,
(plant-specificity: 100%)
GP136900 (7) ,
(plant-specificity: 98%)
GP136974 (7) ,
(plant-specificity: 98%)
GP136977 (7) ,
(plant-specificity: 100%)
GP137722 (6) ,
(plant-specificity: 100%)
GP137881 (6) ,
(plant-specificity: 100%)
GP138976 (5) ,
(plant-specificity: 100%)
GP139160 (5) ,
(plant-specificity: 100%)
GP139598 (5) , GP141151 (4) , GP141275 (4) , GP141358 (4) , GP089631 (4) , GP086645 (4) , GP088694 (3) , GP144562 (3) , GP144578 (3) , GP089700 (3) , GP089130 (3) , GP145630 (3) , GP084590 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 1938
Species Count (w/o splice) Count (w/ splice)
4 4
7 7
18 18
34 46
13 13
35 35
22 22
86 86
71 71
55 55
35 35
43 62
40 45
37 37
42 42
73 108
42 44
28 28
41 41
40 40
32 32
46 67
31 31
62 62
67 151
31 31
62 120
33 33
64 64
37 52
87 87
42 42
48 51
35 35
46 62
86 134
45 45


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Zinc finger, B-box
IPR000315
Zinc finger, B-box Domain 62 (1195) No
CCT domain
IPR010402
CCT domain Domain 53 (1018) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000315 IPR010402


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Species
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