Family GP000860


Family ID GP000860  add to my list RDF
Family name Pleckstrin-like plant family   suggest a name
Synonym(s) Unknown function duf828 (plant)
Family Ontology
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N/A
Curation status ?
Found in Embryophyta plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Pleckstrin-like plant family (plant-specificity: 100%)
GP000860 (339)
2 GP016036 (270) ,
(plant-specificity: 90%)
GP022331 (52) ,
(plant-specificity: 100%)
GP023756 (17)
3 GP040677 (270) ,
(plant-specificity: 90%)
GP047533 (52) ,
(plant-specificity: 100%)
GP049878 (14) , GP060934 (3)
4 GP070105 (227) ,
(plant-specificity: 90%)
GP077395 (52) ,
(plant-specificity: 100%)
GP132572 (43) ,
(plant-specificity: 100%)
GP080237 (14) , GP094326 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 339
Species Count (w/o splice) Count (w/ splice)
1 1
4 4
6 6
4 4
11 11
10 10
10 10
6 6
9 13
8 8
7 7
9 9
12 16
8 8
6 6
6 6
6 6
5 5
10 13
5 5
11 11
9 18
5 5
9 29
8 8
9 9
6 10
13 13
15 15
13 13
12 12
8 10
16 24
8 8


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Domain of unknown function DUF828
IPR008546
Domain of unknown function DUF828 Domain 92 (313) No
Pleckstrin-like, plant
IPR013666
Pleckstrin-like, plant Domain 76 (257) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR008546 IPR013666


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
339 285 (84%) 255 (75%) [58; 400; 1123] ~380 2364 239




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