Family GP000776


Family ID GP000776  add to my list RDF
Family name Nudix hydrolase family   suggest a name
Cross-reference(s) PMID:
Comprehensive analysis of cytosolic nudix hydrolases in Arabidopsis thaliana.
15878881
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Nudix hydrolase family
GP000776 (337)
2 GP015674 (337)
3 GP040340 (337)
4 GP070444 (337)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 337
Species Count (w/o splice) Count (w/ splice)
2 2
1 1
1 1
2 5
3 3
6 6
3 3
13 13
13 13
9 9
4 4
7 10
7 11
4 4
7 7
13 21
7 8
4 4
8 8
8 8
7 7
7 9
6 6
10 10
9 24
6 6
11 21
5 5
11 11
4 6
16 16
8 8
9 11
8 8
10 10
21 29
9 9


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
NUDIX hydrolase domain
IPR000086
NUDIX hydrolase domain Domain 93 (314) No
NUDIX hydrolase domain-like
IPR015797
NUDIX hydrolase domain-like Domain 91 (308) No
NUDIX hydrolase, conserved site
IPR020084
NUDIX hydrolase, conserved site Conserved_site 90 (302) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000086 IPR015797 IPR020084


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
337 279 (83%) 267 (79%) [66; 183; 615] ~189 1542 126


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
337 267 (79%) 1.29398 1.22739 0.484073



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