Family GP001448


Family ID GP001448  add to my list RDF
Family name Membrane insertion protein OxaA/YidC family   suggest a name
Synonym(s) Membrane integrase
Cross-reference(s) PMID:
Loss of Albino3 leads to the specific depletion of the light-harvesting system.
12215522
Family Ontology
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biological_process
protein insertion into membrane
GO:0051205 (1%) - protein insertion into membrane
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Membrane insertion protein OxaA/YidC family
GP001448 (346)
2
Chloroplastic inner membrane protein ALBINO3 subfamily
GP016914 (163) ,
Mitochondrial inner membrane protein OXA1 subfamily
GP017882 (101) ,
(plant-specificity: 9%)
GP019641 (66) ,
(plant-specificity: 100%)
GP113172 (5) , GP026831 (4) ,
(plant-specificity: 100%)
GP114379 (5) , GP115828 (3)
3 GP041551 (163) , GP042559 (101) , GP044526 (66) ,
(plant-specificity: 100%)
GP124495 (5) , GP053313 (4) ,
(plant-specificity: 100%)
GP126217 (5) , GP128271 (3)
4 GP070937 (162) , GP072018 (101) , GP074086 (66) ,
(plant-specificity: 100%)
GP139291 (5) ,
(plant-specificity: 100%)
GP139542 (5) , GP089840 (4) , GP144480 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 346
Species Count (w/o splice) Count (w/ splice)
3 3
3 3
19 19
4 6
2 2
19 19
5 5
8 8
7 7
3 3
5 5
6 11
6 8
7 7
6 6
9 17
6 8
5 5
7 7
10 10
4 4
8 12
9 9
17 17
13 27
7 7
12 24
6 6
8 8
6 11
15 15
5 5
7 7
6 6
6 7
10 14
8 8


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Membrane insertase OXA1/ALB3/YidC
IPR001708
Membrane insertase OXA1/ALB3/YidC Family 73 (254) No
Membrane insertase YidC
IPR019998
Membrane insertase YidC Family 1 (2) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001708


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
346 287 (83%) 213 (62%) [32; 422; 1030] ~370 2868 162