Family GP001087


Family ID GP001087  add to my list RDF
Family name Ninja family   suggest a name
Cross-reference(s) PMID:
A small plant-specific protein family of ABI five binding proteins (AFPs) regulates stress response in germinating Arabidopsis seeds and seedlings.
18484180 PMID:
NINJA connects the co-repressor TOPLESS to jasmonate signalling.
20360743
Curation status ?
Found in Viridiplantae plant-specific
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Ninja family (plant-specificity: 100%)
GP001087 (335)
2 GP016722 (207) ,
(plant-specificity: 100%)
GP018890 (75) ,
(plant-specificity: 100%)
GP022839 (43) , GP112084 (6) , GP114207 (4)
3 GP041354 (177) ,
(plant-specificity: 100%)
GP043947 (75) ,
(plant-specificity: 100%)
GP048137 (43) ,
(plant-specificity: 100%)
GP119882 (19) ,
(plant-specificity: 100%)
GP057336 (11) , GP122873 (6) , GP125965 (4)
4 GP071149 (168) , GP075027 (75) , GP078112 (36) ,
(plant-specificity: 100%)
GP133290 (19) , GP135444 (9) ,
(plant-specificity: 100%)
GP084387 (7) , GP083982 (7) , GP141272 (4) , GP141665 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 335
Species Count (w/o splice) Count (w/ splice)
1 1
4 5
2 2
4 4
4 4
16 16
14 14
9 9
13 13
6 11
8 9
5 5
5 5
8 9
6 6
5 5
12 12
32 32
5 5
6 10
6 6
7 7
9 20
7 7
8 21
7 7
10 10
6 6
13 13
7 7
8 9
6 6
7 8
15 24
7 7


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Ninja
IPR012463
Ninja Family 76 (255) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR012463


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
335 288 (86%) 216 (64%) [43; 318; 1127] ~312 2551 124