Family GP000067


Family ID GP000067  add to my list RDF
Family name Papain superfamily   suggest a name
Cross-reference(s) PMID:
A peptide derived from the C-terminal part of a plant cysteine protease folds into a stack of two beta-hairpins, a scaffold present in the emerging family of granulin-like growth factors.
11298924 PMID:
Structure of papain.
5681232 PMID:
Molecular cloning of a protein associated with soybean seed oil bodies that is similar to thiol proteases of the papain family.
2380191
Family Ontology
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biological_process
regulation of catalytic activity
GO:0050790 (4%) - regulation of catalytic activity
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Papain superfamily
GP000067 (1891)
2 GP015084 (1716) , GP017760 (97) ,
(plant-specificity: 99%)
GP110193 (17) ,
(plant-specificity: 100%)
GP026720 (14) ,
(plant-specificity: 100%)
GP027264 (13) , GP032736 (5) ,
(plant-specificity: 100%)
GP114340 (6) , GP114508 (4) , GP114593 (4) , GP115846 (3) , GP027595 (4) , GP027210 (4)
3 GP039807 (1711) , GP042446 (97) ,
(plant-specificity: 99%)
GP120127 (17) ,
(plant-specificity: 100%)
GP053167 (11) ,
(plant-specificity: 100%)
GP053817 (10) ,
(plant-specificity: 100%)
GP123407 (6) , GP061034 (5) , GP054209 (4) , GP053765 (4) , GP126352 (4) , GP126424 (4) , GP126565 (4) , GP128302 (3) , GP055752 (3) , GP128960 (3) , GP058189 (3)
4 GP069331 (1046) , GP070693 (657) , GP071883 (97) ,
(plant-specificity: 100%)
GP134128 (13) ,
(plant-specificity: 100%)
GP091675 (9) ,
(plant-specificity: 100%)
GP137710 (6) ,
(plant-specificity: 100%)
GP087657 (6) ,
(plant-specificity: 100%)
GP091590 (6) ,
(plant-specificity: 100%)
GP091413 (5) , GP085634 (4) , GP094521 (4) , GP085142 (4) , GP141896 (4) , GP141997 (4) , GP144529 (3) , GP144604 (3) , GP145270 (3) , GP099863 (3) , GP090875 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 1891
Species Count (w/o splice) Count (w/ splice)
37 37
67 67
12 21
45 45
51 51
38 38
34 34
35 35
49 49
28 28
71 85
46 55
42 42
89 89
58 74
47 51
31 31
35 35
37 37
25 25
39 45
36 36
49 49
58 99
29 29
50 94
30 30
51 51
21 25
129 129
59 59
75 80
32 32
40 42
102 108
54 54


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Cysteine peptidase, cysteine active site
IPR000169
Cysteine peptidase, cysteine active site Active_site 62 (1169) No
Peptidase C1A, papain C-terminal
IPR000668
Peptidase C1A, papain C-terminal Domain 86 (1628) No
Proteinase inhibitor I29, cathepsin propeptide
IPR013201
Proteinase inhibitor I29, cathepsin propeptide Domain 71 (1336) No
Cysteine peptidase, histidine active site
IPR025660
Cysteine peptidase, histidine active site Active_site 63 (1193) No
Cysteine peptidase, asparagine active site
IPR025661
Cysteine peptidase, asparagine active site Active_site 59 (1116) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000668 IPR013201 IPR000169 IPR025660 IPR025661


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Species
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