Family GP000926


Family ID GP000926  add to my list RDF
Family name Sucrose-proton symporter family   suggest a name
Synonym(s) Glycoside-pentoside-hexuronide (GPH) cation symporter transporter (TC 2.A.2) family
Cross-reference(s) PMID:
The sucrose transporter gene family in rice.
12668768
Family Ontology
Close Hide
molecular_function
sucrose transmembrane transporter activity
GO:0008515 (42%) - sucrose transmembrane transporter activity
transmembrane transporter activity
GO:0022857 (17%) - transmembrane transporter activity
biological_process
sucrose transport
GO:0015770 (42%) - sucrose transport
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Sucrose-proton symporter family
GP000926 (331)
2 GP015840 (330)
3 GP040490 (330)
4 GP069937 (330)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 331
Species Count (w/o splice) Count (w/ splice)
1 1
6 9
5 5
13 13
5 5
5 5
7 7
7 7
4 4
5 10
5 6
5 5
6 6
7 17
6 6
4 4
2 2
3 3
4 4
9 12
4 4
14 14
9 25
7 7
5 11
4 4
14 14
3 7
19 19
26 26
14 14
11 11
10 12
16 24
8 8


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Sucrose/H+ symporter, plant
IPR005989
Sucrose/H+ symporter, plant Family 42 (140) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Major facilitator superfamily domain, general substrate transporter
IPR016196
Major facilitator superfamily domain, general substrate transporter Domain 81 (268) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR016196 IPR005989


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
331 273 (82%) 208 (63%) [51; 495; 1408] ~426 2671 398