Family GP000611


Family ID GP000611  add to my list RDF
Family name Lipopolysaccharide-modifying family   suggest a name
Cross-reference(s) PMID:
Isolation, characterization, and localization of a capsule-associated gene, CAP10, of Cryptococcus neoformans.
10482503
Comment present unknown function DUF821, CAP10-like domain
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Lipopolysaccharide-modifying family
GP000611 (332)
2 GP015796 (304) ,
(plant-specificity: 22%)
GP110846 (11) ,
(plant-specificity: 9%)
GP111281 (10) , GP111577 (7)
3 GP040443 (304) ,
(plant-specificity: 22%)
GP121010 (11) ,
(plant-specificity: 9%)
GP121315 (10) , GP122689 (7)
4 GP069883 (304) ,
(plant-specificity: 22%)
GP134628 (11) ,
(plant-specificity: 11%)
GP135403 (9) , GP136750 (7)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 332
Species Count (w/o splice) Count (w/ splice)
32 32
12 12
17 17
3 3
9 9
8 8
7 7
4 4
6 7
6 6
3 3
12 12
6 13
6 6
10 10
5 5
8 8
11 11
9 11
4 4
14 14
8 8
16 16
7 11
6 6
8 8
6 6
12 12
7 7
12 12
5 5
5 5
21 28
6 6


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Lipopolysaccharide-modifying protein
IPR006598
Lipopolysaccharide-modifying protein Family 95 (315) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR006598


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
332 303 (91%) 256 (77%) [59; 473; 1227] ~427 3489 334