Family GP000888


Family ID GP000888  add to my list RDF
Family name Thiolase family   suggest a name
Synonym(s) Acetyl-CoA acetyltransferase
Cross-reference(s) PMID:
Phylogenetic analysis of the thiolase family. Implications for the evolutionary origin of peroxisomes.
1354266
Family Ontology
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molecular_function
primary amine oxidase activity
GO:0008131 (2%) - primary amine oxidase activity
biological_process
amine metabolic process
GO:0009308 (2%) - amine metabolic process
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Thiolase family (plant-specificity: 19%)
GP000888 (335)
2 GP016849 (335)
3
3-ketoacyl-CoA thiolase subfamily
GP041489 (188) , GP041519 (147)
4 GP070873 (182) , GP070904 (147) ,
(plant-specificity: 96%)
GP082069 (6)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 335
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
7 7
5 6
5 5
29 29
2 2
9 9
7 7
13 13
6 6
5 9
4 7
4 4
5 5
13 24
4 7
4 4
5 5
5 5
10 10
5 12
4 4
19 19
5 16
5 5
7 20
8 8
6 6
5 12
17 17
7 7
5 6
5 5
5 6
8 16
8 8


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Thiolase
IPR002155
Thiolase Family 74 (248) No
Beta-ketoadipyl CoA thiolase
IPR012793
Beta-ketoadipyl CoA thiolase Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Thiolase-like, subgroup
IPR016038
Thiolase-like, subgroup Domain 93 (311) No
Thiolase-like
IPR016039
Thiolase-like Domain 93 (312) No
Thiolase, active site
IPR020610
Thiolase, active site Active_site 63 (211) No
Thiolase, conserved site
IPR020613
Thiolase, conserved site Conserved_site 71 (238) No
Thiolase, N-terminal
IPR020616
Thiolase, N-terminal Domain 88 (295) No
Thiolase, C-terminal
IPR020617
Thiolase, C-terminal Domain 82 (276) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR016038 IPR016039 IPR020613 IPR002155 IPR020616 IPR020617 IPR020610


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
335 265 (79%) 209 (62%) [46; 407; 1373] ~374 2691 293