Family GP002686


Family ID GP002686  add to my list RDF
Family name Chaperonin superfamily (cpn10)   suggest a name
Cross-reference(s) PMID:
Homologous plant and bacterial proteins chaperone oligomeric protein assembly.
2897629 PMID:
cDNA clones encoding Arabidopsis thaliana and Zea mays mitochondrial chaperonin HSP60 and gene expression during seed germination and heat shock.
1349837
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Chaperonin superfamily (cpn10) (plant-specificity: 9%)
GP002686 (332)
2
Chaperonin 21 chloroplast type family
GP017052 (260) , GP018667 (72)
3 GP041696 (148) ,
Chaperonin GroES subfamily
GP041975 (112) , GP043411 (70)
4 GP071096 (148) , GP071381 (112) , GP072918 (70)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 332
Species Count (w/o splice) Count (w/ splice)
2 2
4 4
22 22
10 12
8 8
15 15
4 4
9 9
8 8
6 6
4 4
7 10
5 8
4 4
6 6
13 42
6 7
4 4
5 5
5 5
6 6
5 7
4 4
8 8
6 18
5 5
8 18
3 3
7 7
5 7
12 12
7 7
7 8
5 5
7 7
14 19
6 6


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Chaperonin 21, chloroplast
IPR017416
Chaperonin 21, chloroplast Family 27 (89) Yes
Chaperonin Cpn10
IPR020818
Chaperonin Cpn10 Family 91 (301) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
GroES-like
IPR011032
GroES-like Domain 90 (298) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011032 IPR020818


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
332 262 (79%) 254 (77%) [31; 136; 416] ~162 1320 77


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
332 254 (77%) 1.07592 1.03355 0.179281



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