Family GP000939


Family ID GP000939  add to my list RDF
Family name Prephenate dehydratase family   suggest a name
Synonym(s) Arogenate dehydratase
Cross-reference(s) PMID:
Phenylalanine biosynthesis in Arabidopsis thaliana. Identification and characterization of arogenate dehydratases.
17726025
Family Ontology
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molecular_function
prephenate dehydratase activity
GO:0004664 (69%) - prephenate dehydratase activity
biological_process
L-phenylalanine biosynthetic process
GO:0009094 (69%) - L-phenylalanine biosynthetic process
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Prephenate dehydratase family
GP000939 (326)
2 GP015899 (316) , GP115304 (4) , GP036525 (4)
3 GP040560 (315) , GP058253 (4) , GP127476 (4)
4 GP070002 (314) , GP090951 (4) , GP143282 (4) , GP143989 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 326
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
16 16
5 5
3 3
38 38
4 4
16 16
17 17
11 11
10 10
14 15
7 7
6 6
7 7
8 15
5 5
5 5
4 4
4 4
4 4
6 8
7 7
9 9
6 18
5 5
5 6
5 5
9 9
6 7
10 10
4 4
5 7
7 7
7 7
11 17
6 6


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Prephenate dehydratase
IPR001086
Prephenate dehydratase Domain 81 (263) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
Prephenate dehydratase, conserved site
IPR018528 IPR001086



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Species
Information to display
?


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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
326 294 (90%) 239 (73%) [58; 385; 937] ~338 2717 292