Family GP000128


Family ID GP000128  add to my list RDF
Family name MYB family transcription factor Group3 SHAQKYF   suggest a name
Family Ontology
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molecular_function
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity
GO:0008766 (1%) - UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
MYB family transcription factor Group3 SHAQKYF (plant-specificity: 30%)
GP000128 (1885)
2 GP015347 (1332) , GP016101 (391) ,
(plant-specificity: 90%)
GP108930 (128) , GP109621 (29)
3 GP040105 (1332) , GP040713 (378) , GP041997 (128) , GP119408 (29) ,
(plant-specificity: 91%)
GP122096 (11)
4 GP069903 (815) , GP069748 (360) , GP070153 (306) , GP072525 (126) ,
(plant-specificity: 100%)
GP094944 (124) ,
(plant-specificity: 96%)
GP084267 (59) , GP132793 (29) ,
(plant-specificity: 95%)
GP133410 (18) ,
(plant-specificity: 91%)
GP134614 (11) ,
(plant-specificity: 75%)
GP080566 (7) ,
(plant-specificity: 82%)
GP136992 (7) , GP144078 (3) , GP084510 (3) , GP092742 (3) , GP148294 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 1885
Species Count (w/o splice) Count (w/ splice)
9 9
6 6
26 26
17 23
13 13
45 45
25 25
54 54
56 56
42 42
36 36
48 65
34 43
42 42
54 54
63 90
50 52
30 30
57 57
46 46
30 30
39 56
38 38
64 64
55 125
26 26
52 110
26 26
55 55
36 49
63 63
45 45
57 58
34 34
58 71
114 158
63 63


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
UDP-MurNAc-pentapeptide synthetase
IPR005863
UDP-MurNAc-pentapeptide synthetase Family 1 (17) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
SANT/Myb domain
IPR001005
SANT/Myb domain Domain 83 (1569) No
Myb domain, plants
IPR006447
Myb domain, plants Domain 65 (1232) No
Homeodomain-like
IPR009057
Homeodomain-like Domain 87 (1648) No
Myb domain
IPR017930
Myb domain Domain 63 (1186) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR009057 IPR001005 IPR006447 IPR017930


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Species
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