Family GP000950


Family ID GP000950  add to my list RDF
Family name Aldehyde oxidase/xanthine dehydrogenase family   suggest a name
Synonym(s) Xanthine dehydrogenase
Cross-reference(s) PMID:
A unique short-chain dehydrogenase/reductase in Arabidopsis glucose signaling and abscisic acid biosynthesis and functions.
12417697 PMID:
Comparative studies on the Arabidopsis aldehyde oxidase (AAO) gene family revealed a major role of AAO3 in ABA biosynthesis in seeds.
15574845 PMID:
Regulation of osmotic stress-responsive gene expression by the LOS6/ABA1 locus in Arabidopsis.
11779861
Family Ontology
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molecular_function
UDP-N-acetylmuramate dehydrogenase activity
GO:0008762 (18%) - UDP-N-acetylmuramate dehydrogenase activity
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Aldehyde oxidase/xanthine dehydrogenase family
GP000950 (321)
2 GP015863 (308) , GP111825 (8) ,
(plant-specificity: 12%)
GP112194 (8)
3 GP040549 (305) ,
(plant-specificity: 100%)
GP121689 (10) ,
(plant-specificity: 12%)
GP122406 (8) , GP122497 (8)
4 GP069991 (294) , GP134170 (13) ,
(plant-specificity: 100%)
GP100472 (10) , GP137422 (7) ,
(plant-specificity: 16%)
GP138595 (6)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 321
Species Count (w/o splice) Count (w/ splice)
3 3
6 6
7 7
39 39
11 11
3 3
4 4
9 9
6 6
12 15
7 11
12 12
9 9
11 13
9 11
12 12
7 7
14 14
6 6
10 12
5 5
13 13
5 12
7 7
4 7
14 14
6 6
3 7
8 8
9 9
5 5
3 3
3 3
8 8
4 4


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Carbon monoxide dehydrogenase subunit G
IPR010419
Carbon monoxide dehydrogenase subunit G Family 1 (3) Yes
Membrane-bound alcohol dehydrogenase, cytochrome c subunit
IPR014353
Membrane-bound alcohol dehydrogenase, cytochrome c subunit Family 1 (3) Yes
Aldehyde oxidase/xanthine dehydrogenase
IPR016208
Aldehyde oxidase/xanthine dehydrogenase Family 45 (143) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead
IPR000674
Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Domain 64 (206) No
2Fe-2S ferredoxin-type domain
IPR001041
2Fe-2S ferredoxin-type domain Domain 57 (182) No
Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding
IPR008274
Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding Domain 80 (256) No
Beta-grasp domain
IPR012675
Beta-grasp domain Domain 60 (191) No
FAD-binding, type 2
IPR016166
FAD-binding, type 2 Domain 60 (191) No
CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2
IPR016169
CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 Domain 59 (188) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR016169 IPR016166 IPR000674 IPR001041 IPR016208
CO dehydrogenase flavoprotein, C-terminal
IPR005107 IPR008274
Molybdopterin dehydrogenase, FAD-binding
IPR002346
[2Fe-2S]-binding
IPR002888 IPR012675



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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
321 293 (91%) 176 (55%) [45; 1167; 2728] ~892 4444 860