Family GP000540


Family ID GP000540  add to my list RDF
Family name Flavoprotein WrbA family   suggest a name
Synonym(s) Flavodoxin nitric oxide synthase
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Flavoprotein WrbA family (plant-specificity: 22%)
GP000540 (324)
2 GP015791 (324)
3 GP040440 (324)
4 GP069881 (322)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 324
Species Count (w/o splice) Count (w/ splice)
1 1
5 5
2 2
7 11
2 2
8 8
3 3
8 8
8 8
9 9
4 4
4 6
6 7
8 8
6 6
10 15
6 9
6 6
8 8
9 9
11 11
4 6
4 4
13 13
8 22
5 5
9 17
5 5
7 7
5 6
8 8
11 11
11 12
7 7
11 13
26 34
8 8


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Flavoprotein WrbA
IPR010089
Flavoprotein WrbA Family 82 (265) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
NADPH-dependent FMN reductase
IPR005025
NADPH-dependent FMN reductase Domain 86 (280) No
Flavodoxin/nitric oxide synthase
IPR008254
Flavodoxin/nitric oxide synthase Domain 85 (277) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR005025 IPR010089 IPR008254


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
324 272 (84%) 252 (78%) [49; 204; 591] ~202 1041 197


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
324 252 (78%) 0.683082 0.530446 0.281008



for (default: all):
Species



(click on the button above to get your homolog prediction list)