Family GP000782


Family ID GP000782  add to my list RDF
Family name glycosyltransferase family 43   suggest a name
Cross-reference(s) PMID:
A classification of nucleotide-diphospho-sugar glycosyltransferases based on amino acid sequence similarities.
9334165
Family Ontology
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molecular_function
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity
GO:0015018 (92%) - galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
glycosyltransferase family 43 (plant-specificity: 19%)
GP000782 (326)
2 GP016096 (227) , GP017780 (99)
3 GP040757 (222) , GP042506 (99) , GP060051 (3)
4 GP070201 (222) , GP071958 (98) , GP092922 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 326
Species Count (w/o splice) Count (w/ splice)
5 5
3 3
5 5
4 4
19 19
20 20
12 12
9 9
14 18
10 14
11 11
11 11
17 28
10 10
5 5
4 4
8 8
4 4
4 5
4 4
7 7
10 21
4 4
7 12
4 4
7 7
4 9
15 15
7 7
6 6
5 5
5 7
14 18
5 5


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Glycosyl transferase, family 43
IPR005027
Glycosyl transferase, family 43 Family 92 (301) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR005027


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
326 279 (86%) 252 (77%) [30; 395; 1176] ~385 2656 196


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
326 252 (77%) 1.60347 1.42732 0.598505



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