Family GP001128


Family ID GP001128  add to my list RDF
Family name Tobamovirus multiplication family   suggest a name
Synonym(s) TOM
Family Ontology
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N/A
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Tobamovirus multiplication family (plant-specificity: 60%)
GP001128 (320)
2 GP016135 (239) ,
(plant-specificity: 100%)
GP019259 (81)
3 GP040755 (239) ,
(plant-specificity: 100%)
GP043957 (81)
4 GP070179 (239) , GP073976 (78) , GP089091 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 320
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
6 6
7 7
7 7
4 4
11 11
9 9
11 11
8 8
7 10
4 6
3 3
9 9
10 30
7 7
4 4
8 8
6 6
9 9
4 7
3 3
6 6
12 21
5 5
6 30
4 4
7 7
5 9
8 8
7 7
11 12
7 7
5 5
13 26
5 5


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Domain of unknown function DUF1084
IPR009457
Domain of unknown function DUF1084 Domain 90 (288) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR009457


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
320 241 (75%) 189 (59%) [47; 287; 1435] ~267 2860 204