Family GP000518


Family ID GP000518  add to my list RDF
Family name Xyloglucan fucosyltransferase family   suggest a name
Cross-reference(s) PMID:
Characterization of a family of Arabidopsis genes related to xyloglucan fucosyltransferase1.
11743104 PMID:
Xyloglucan fucosyltransferase, an enzyme involved in plant cell wall biosynthesis.
10373113
Family Ontology
Close Hide
molecular_function
galactoside 2-alpha-L-fucosyltransferase activity
GO:0008107 (95%) - galactoside 2-alpha-L-fucosyltransferase activity
Curation status ?
Found in Plant-specific plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Xyloglucan fucosyltransferase family (plant-specificity: 100%)
GP000518 (319)
2 GP015614 (317)
3 GP040280 (317)
4 GP069730 (317)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 319
Species Count (w/o splice) Count (w/ splice)
1 1
12 13
10 10
3 3
3 3
13 13
14 14
7 7
9 9
21 22
16 16
13 13
23 23
19 20
20 20
5 5
2 2
3 3
2 2
11 13
3 3
7 7
2 3
2 2
8 11
10 10
8 8
3 3
6 6
6 6
10 10
3 3
6 7
11 23
5 5


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Xyloglucan fucosyltransferase
IPR004938
Xyloglucan fucosyltransferase Family 95 (302) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR004938


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
319 297 (93%) 275 (86%) [72; 552; 1316] ~506 2095 367


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
319 275 (86%) 1.29743 1.14672 0.495242



for (default: all):
Species



(click on the button above to get your homolog prediction list)