Family GP001588


Family ID GP001588  add to my list RDF
Family name Uridine nucleosidase family   suggest a name
Synonym(s) Inosine / uridine-preferring nucleoside hydrolase
Cross-reference(s) PMID:
Uridine-ribohydrolase is a key regulator in the uridine degradation pathway of Arabidopsis.
19293370 PMID:
Inosine-uridine nucleoside hydrolase from Crithidia fasciculata. Genetic characterization, crystallization, and identification of histidine 241 as a catalytic site residue.
8634237
Family Ontology
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molecular_function
transmembrane transporter activity
GO:0022857 (1%) - transmembrane transporter activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Uridine nucleosidase family (plant-specificity: 19%)
GP001588 (319)
2 GP016781 (169) , GP017617 (145) , GP117321 (3)
3 GP041422 (169) , GP042274 (143) , GP130484 (3)
4 GP070800 (169) , GP071707 (143) , GP147560 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 319
Species Count (w/o splice) Count (w/ splice)
1 1
6 6
18 18
3 3
3 3
16 16
3 3
11 11
7 7
9 9
8 8
5 13
5 6
9 9
7 7
6 15
8 9
3 3
10 10
14 14
4 4
5 6
4 4
9 9
9 20
4 4
6 13
5 5
5 5
4 10
13 13
8 8
9 9
4 4
4 6
10 20
8 8


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Inosine/uridine-preferring nucleoside hydrolase domain
IPR001910
Inosine/uridine-preferring nucleoside hydrolase domain Domain 92 (292) No

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Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001910


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
319 261 (82%) 200 (63%) [34; 332; 3442] ~452 5373 161