Family GP000855


Family ID GP000855  add to my list RDF
Family name Acyl-acp thioesterase family   suggest a name
Synonym(s) Acyl carrier protein thioesterase
Cross-reference(s) PMID:
Modification of the substrate specificity of an acyl-acyl carrier protein thioesterase by protein engineering.
7479856
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Acyl-acp thioesterase family (plant-specificity: 19%)
GP000855 (321)
2 GP015818 (309) ,
(plant-specificity: 100%)
GP024346 (12)
3 GP040466 (309) ,
(plant-specificity: 100%)
GP052382 (7) ,
(plant-specificity: 100%)
GP055377 (5)
4 GP069906 (309) ,
(plant-specificity: 100%)
GP083405 (7) ,
(plant-specificity: 100%)
GP087231 (5)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
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    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 321
Species Count (w/o splice) Count (w/ splice)
1 1
8 8
15 17
7 7
12 12
5 5
7 7
7 7
13 13
8 8
6 12
5 5
2 2
7 7
9 15
7 7
5 5
4 4
4 4
5 5
3 3
4 4
14 14
10 27
6 6
12 20
6 6
10 10
6 8
23 23
4 4
9 9
4 4
6 7
12 18
7 7


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Acyl-ACP thioesterase
IPR002864
Acyl-ACP thioesterase Family 92 (295) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
Acyl-ACP-thioesterase, N-terminal
IPR021113 IPR002864



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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
321 273 (85%) 235 (73%) [66; 376; 592] ~344 1424 231




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