Family GP001263


Family ID GP001263  add to my list RDF
Family name Ribosomal rna adenine methylase transferase family   suggest a name
Cross-reference(s) PMID:
Crystal structure of KsgA, a universally conserved rRNA adenine dimethyltransferase in Escherichia coli.
15136037 PMID:
Crystal structure of the transcription factor sc-mtTFB offers insights into mitochondrial transcription.
11567089 PMID:
Human mitochondrial transcription factor B1 interacts with the C-terminal activation region of h-mtTFA and stimulates transcription independently of its RNA methyltransferase activity.
12897151
Family Ontology
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molecular_function
rRNA (adenine-N6,N6-)-dimethyltransferase activity
GO:0000179 (44%) - rRNA (adenine-N6,N6-)-dimethyltransferase activity
rRNA (adenine) methyltransferase activity
GO:0016433 (24%) - rRNA (adenine) methyltransferase activity
biological_process
rRNA modification
GO:0000154 (44%) - rRNA modification
rRNA processing
GO:0006364 (24%) - rRNA processing
GPI anchor metabolic process
GO:0006505 (23%) - GPI anchor metabolic process
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Ribosomal rna adenine methylase transferase family (plant-specificity: 19%)
GP001263 (317)
2
Ribosomal RNA adenine dimethylase subfamily
GP017781 (108) ,
(plant-specificity: 9%)
GP109048 (94) , GP020347 (66) ,
(plant-specificity: 100%)
GP022759 (34) ,
(plant-specificity: 19%)
GP030194 (5) , GP115705 (3) , GP115870 (3)
3 GP042461 (108) ,
(plant-specificity: 9%)
GP118844 (94) , GP045329 (66) ,
(plant-specificity: 100%)
GP048377 (31) , GP060515 (3) , GP128026 (3) , GP128332 (3) , GP130077 (3)
4 GP071901 (108) ,
(plant-specificity: 9%)
GP132319 (93) , GP074950 (56) , GP078399 (31) , GP136101 (8) , GP093438 (3) , GP143993 (3) , GP144574 (3) , GP147058 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 317
Species Count (w/o splice) Count (w/ splice)
4 4
6 6
20 20
8 10
4 4
11 11
6 6
8 8
5 5
7 7
11 11
6 7
7 9
5 5
8 8
5 11
8 9
6 6
5 5
5 5
4 4
6 9
10 11
14 14
7 13
4 4
7 9
7 7
6 6
6 7
14 14
10 10
6 6
12 12
9 10
12 18
6 6


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
4-hydroxythreonine-4-phosphate dehydrogenase PdxA
IPR005255
4-hydroxythreonine-4-phosphate dehydrogenase PdxA Family 1 (1) Yes
18S rRNA dimethylase DIM1
IPR025814
18S rRNA dimethylase DIM1 Family 24 (77) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
317 285 (90%) 200 (63%) [36; 348; 1869] ~426 3332 134