Family GP000952


Family ID GP000952  add to my list RDF
Family name Alpha-1,4-glucan-protein synthase [udp-forming] family   suggest a name
Synonym(s) Reversibly glycosylated polypeptide
Cross-reference(s) PMID:
Characterization of UDP-glucose:protein transglucosylase genes from potato.
13677461
Family Ontology
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molecular_function
protein binding
GO:0005515 (3%) - protein binding
alanine:sodium symporter activity
GO:0015655 (1%) - alanine:sodium symporter activity
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016705 (1%) - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
sodium:dicarboxylate symporter activity
GO:0017153 (1%) - sodium:dicarboxylate symporter activity
biological_process
alanine transport
GO:0032328 (1%) - alanine transport
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Alpha-1,4-glucan-protein synthase [udp-forming] family (plant-specificity: 77%)
GP000952 (316)
2 GP015948 (287) ,
(plant-specificity: 100%)
GP025184 (23) ,
(plant-specificity: 100%)
GP027019 (6)
3 GP040604 (287) ,
(plant-specificity: 100%)
GP051125 (23) ,
(plant-specificity: 100%)
GP053555 (6)
4 GP070046 (287) ,
(plant-specificity: 100%)
GP081745 (23) ,
(plant-specificity: 100%)
GP084912 (6)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 316
Species Count (w/o splice) Count (w/ splice)
2 2
8 11
4 4
12 12
4 4
12 12
12 12
12 12
5 5
4 5
5 5
5 5
3 3
9 11
5 5
6 6
9 9
27 27
6 6
6 7
4 4
9 9
12 25
6 6
12 12
6 6
10 10
5 6
26 26
3 3
7 8
8 8
6 7
11 15
8 8


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Sodium:neurotransmitter symporter
IPR000175
Sodium:neurotransmitter symporter Family 1 (2) Yes
GPCR fungal pheromone mating factor, STE2
IPR000366
GPCR fungal pheromone mating factor, STE2 Family 1 (1) Yes
Polycystic kidney disease type 1 protein
IPR000434
Polycystic kidney disease type 1 protein Family 1 (1) Yes
Sodium:alanine symporter
IPR001463
Sodium:alanine symporter Family 1 (2) Yes
Bride of sevenless protein
IPR002956
Bride of sevenless protein Family 1 (1) Yes
Reversibly glycosylated polypeptide family
IPR004901
Reversibly glycosylated polypeptide family Family 81 (256) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR004901


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
316 289 (91%) 227 (72%) [42; 352; 1802] ~322 3236 284