Family GP000819


Family ID GP000819  add to my list RDF
Family name Potassium channel, two pore-domain family   suggest a name
Cross-reference(s) PMID:
TASK, a human background K+ channel to sense external pH variations near physiological pH.
9312005 PMID:
TWIK-1, a ubiquitous human weakly inward rectifying K+ channel with a novel structure.
8605869 PMID:
A new family of outwardly rectifying potassium channel proteins with two pore domains in tandem.
7651518
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Potassium channel, two pore-domain family (plant-specificity: 19%)
GP000819 (317)
2 GP016021 (249) ,
(plant-specificity: 19%)
GP019175 (66)
3 GP040681 (249) ,
(plant-specificity: 19%)
GP044009 (66)
4 GP071228 (133) , GP071695 (113) , GP073523 (66) , GP144524 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 317
Species Count (w/o splice) Count (w/ splice)
2 2
1 1
5 5
5 6
5 5
7 7
5 5
7 7
6 6
9 9
8 8
5 7
5 9
5 5
6 6
7 11
5 5
5 5
6 6
7 7
10 10
7 11
8 8
8 8
11 26
9 9
11 20
8 8
15 15
4 5
23 23
6 6
9 9
6 6
6 6
11 19
6 6


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Two pore domain potassium channel
IPR003280
Two pore domain potassium channel Family 63 (201) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Two pore domain potassium channel domain
IPR013099
Two pore domain potassium channel domain Domain 72 (229) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR013099 IPR003280


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
317 269 (85%) 206 (65%) [57; 348; 1130] ~308 2079 227