Family GP000935


Family ID GP000935  add to my list RDF
Family name phosphoenolpyruvate carboxylase family   suggest a name
Synonym(s) PEP
Cross-reference(s) PMID:
Sorghum phosphoenolpyruvate carboxylase gene family: structure, function and molecular evolution.
8443342 PMID:
Complete nucleotide sequence of one member of the Sorghum phosphoenolpyruvate carboxylase gene family.
1840686
Comment phosphoenolpyruvate carboxylase involved in c4 photosynthesis
Family Ontology
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molecular_function
phosphoenolpyruvate carboxylase activity
GO:0008964 (63%) - phosphoenolpyruvate carboxylase activity
biological_process
carbon fixation
GO:0015977 (63%) - carbon fixation
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
phosphoenolpyruvate carboxylase family (plant-specificity: 9%)
GP000935 (315)
2 GP015851 (312) ,
(plant-specificity: 100%)
GP111638 (12)
3 GP040500 (311) ,
(plant-specificity: 100%)
GP120793 (12) , GP128611 (3)
4 GP069933 (311) ,
(plant-specificity: 100%)
GP134399 (12) , GP144979 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 315
Species Count (w/o splice) Count (w/ splice)
1 1
3 3
17 17
8 11
6 6
17 17
2 2
6 6
7 7
6 6
6 6
7 14
6 7
6 6
7 7
6 10
6 6
5 5
5 5
6 6
4 4
5 8
4 4
10 10
6 9
3 3
5 17
7 7
7 7
3 5
23 23
13 13
10 11
8 8
6 6
20 26
6 6


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Phosphoenolpyruvate carboxylase
IPR021135
Phosphoenolpyruvate carboxylase Family 90 (283) No
Phosphoenolpyruvate carboxylase, bacterial/plant-type
IPR022805
Phosphoenolpyruvate carboxylase, bacterial/plant-type Family 63 (198) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Pyruvate/Phosphoenolpyruvate kinase-like domain
IPR015813
Pyruvate/Phosphoenolpyruvate kinase-like domain Domain 91 (287) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR015813
Phosphoenolpyruvate carboxylase, active site
IPR018129 IPR021135 IPR022805



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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
315 273 (87%) 207 (66%) [45; 965; 1594] ~796 2919 828