Family GP000070


Family ID GP000070  add to my list RDF
Family name Pollen allergen/expansin superfamily   suggest a name
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Pollen allergen/expansin superfamily (plant-specificity: 30%)
GP000070 (1833)
2
Expansin/Lol pI family
GP015113 (1783) ,
(plant-specificity: 100%)
GP019463 (43) , GP115875 (3)
3 GP039828 (1130) , GP040147 (397) , GP040700 (253) , GP044875 (43) , GP128343 (3) , GP131502 (3)
4
Alpha-Expansin subfamily
GP069349 (1130) ,
Beta-Expansins subfamily
GP069705 (397) ,
Expansin-Like A and B subfamily
GP070130 (253) , GP074728 (35) ,
(plant-specificity: 100%)
GP139836 (5) , GP144589 (3) , GP086340 (3) , GP148771 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 1833
Species Count (w/o splice) Count (w/ splice)
12 12
3 3
45 48
19 19
112 112
19 19
60 60
54 54
43 43
24 24
74 79
65 65
54 54
83 83
105 151
90 94
27 27
37 37
41 41
31 31
35 42
27 27
36 36
50 79
28 28
39 58
26 26
45 45
37 40
77 77
40 40
53 54
42 42
38 40
82 98
45 45


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Expansin
IPR002963
Expansin Family 58 (1054) No
Pollen allergen Lol p2
IPR005453
Pollen allergen Lol p2 Family 1 (27) Yes
Expansin/Lol pI
IPR007118
Expansin/Lol pI Family 86 (1574) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Expansin/pollen allergen, DPBB domain
IPR007112
Expansin/pollen allergen, DPBB domain Domain 88 (1606) No
Expansin, cellulose-binding-like domain
IPR007117
Expansin, cellulose-binding-like domain Domain 88 (1609) No
RlpA-like double-psi beta-barrel domain
IPR009009
RlpA-like double-psi beta-barrel domain Domain 89 (1625) No
Barwin-like endoglucanase
IPR014733
Barwin-like endoglucanase Domain 89 (1631) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR014733 IPR007112 IPR009009 IPR007117 IPR007118 IPR002963


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Species
Information to display
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