Family GP000967


Family ID GP000967  add to my list RDF
Family name Ethylene insensitive 3 family   suggest a name
Synonym(s) EIL transcription factor family, EIN-3-like transcription factor
Cross-reference(s) PMID:
Activation of the ethylene gas response pathway in Arabidopsis by the nuclear protein ETHYLENE-INSENSITIVE3 and related proteins.
9215635 PMID:
Molecular and biochemical characterization of VR-EILs encoding mung bean ETHYLENE INSENSITIVE3-LIKE proteins.
12857828
Family Ontology
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molecular_function
sucrose-phosphate phosphatase activity
GO:0050307 (1%) - sucrose-phosphate phosphatase activity
biological_process
sucrose biosynthetic process
GO:0005986 (1%) - sucrose biosynthetic process
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Ethylene insensitive 3 family (plant-specificity: 90%)
GP000967 (307)
2 GP015891 (305)
3 GP040540 (305)
4 GP069994 (305)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
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    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 307
Species Count (w/o splice) Count (w/ splice)
2 2
6 6
8 8
2 2
17 17
21 21
10 10
7 7
10 12
6 6
5 5
9 9
9 9
7 7
4 4
11 11
9 9
3 3
6 6
4 4
20 20
11 17
3 3
8 20
4 4
2 2
4 9
17 17
8 8
17 17
7 7
7 7
11 12
6 6


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Protein of unknown function DUF2841
IPR021264
Protein of unknown function DUF2841 Family 1 (4) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
Ethylene insensitive 3-like protein, DNA-binding domain
IPR023278



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Species
<|abel class="one-line"> Theobroma cacao
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
307 281 (92%) 251 (82%) [50; 597; 1254] ~518 2585 255




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