Family GP000613


Family ID GP000613  add to my list RDF
Family name E2F transcription factor family   suggest a name
Cross-reference(s) PMID:
In vivo association of E2F and DP family proteins.
7739537
Family Ontology
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molecular_function
protein binding
GO:0005515 (1%) - protein binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
E2F transcription factor family
GP000613 (299)
2 GP016573 (204) , GP018071 (92) , GP115752 (3)
3 GP041186 (195) , GP042761 (92) , GP121710 (9) , GP128099 (3)
4 GP070587 (195) , GP072239 (92) , GP135470 (9) , GP144122 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 299
Species Count (w/o splice) Count (w/ splice)
3 3
1 1
18 18
7 7
3 3
5 5
3 3
8 8
7 7
8 8
9 9
6 8
6 6
4 4
5 5
10 12
6 6
9 9
8 8
7 7
5 5
6 11
5 5
11 11
11 26
5 5
9 15
5 5
8 8
6 12
13 13
6 6
4 5
4 4
5 7
12 19
5 5


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Transcription factor E2F/dimerisation partner (TDP)
IPR003316
Transcription factor E2F/dimerisation partner (TDP) Domain 82 (245) No
Winged helix-turn-helix DNA-binding domain
IPR011991
Winged helix-turn-helix DNA-binding domain Domain 83 (247) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011991 IPR003316


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Species
Information to display
?


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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
299 253 (85%) 229 (77%) [62; 418; 1196] ~398 3295 168


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
299 229 (77%) 1.79802 1.16356 1.40253



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