Family GP000156


Family ID GP000156  add to my list RDF
Family name Major Intrinsic family (MIP)   suggest a name
Synonym(s) Aquaporin
Cross-reference(s) PMID:
The MIP family of integral membrane channel proteins: sequence comparisons, evolutionary relationships, reconstructed pathway of evolution, and proposed functional differentiation of the two repeated halves of the proteins.
8325040 PMID:
Evolution of the MIP family of integral membrane transport proteins.
2014003 PMID:
From structure to disease: the evolving tale of aquaporin biology.
15340377
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Major Intrinsic family (MIP)
GP000156 (1726)
2
Tonoplast intrinsic protein (TIP) subfamily
GP015306 (1119) , GP015451 (460) , GP017068 (142) ,
(plant-specificity: 100%)
GP113335 (5)
3 GP039970 (668) , GP040107 (458) , GP040134 (451) , GP043034 (98) ,
(plant-specificity: 9%)
GP046479 (44) ,
(plant-specificity: 100%)
GP124738 (5)
4
Plasma membrane intrinsic protein (PIP) subfamily
GP069478 (648) ,
NOD26-like intrinsic protein (NIP) subfamily
GP069959 (458) ,
Tonoplast intrinsic protein (TIP) subfamily
GP069615 (451) ,
Small basic intrinsic protein (SIP) subfamily
GP072531 (98) , GP076191 (44) , GP133274 (19) , GP145758 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 1726
Species Count (w/o splice) Count (w/ splice)
1 1
3 3
26 39
21 21
78 78
23 23
53 53
47 47
40 40
29 29
37 45
33 35
35 35
43 43
44 72
42 43
39 39
48 48
47 47
33 33
38 47
30 30
57 57
59 99
37 37
61 113
39 39
52 52
31 45
84 84
49 49
55 61
46 46
42 45
86 107
41 41


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Major intrinsic protein
IPR000425
Major intrinsic protein Family 93 (1606) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Major intrinsic protein, conserved site
IPR022357
Major intrinsic protein, conserved site Conserved_site 72 (1243) No
Aquaporin-like
IPR023271
Aquaporin-like Domain 94 (1618) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000425 IPR023271 IPR022357


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Species
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