Family GP001051


Family ID GP001051  add to my list RDF
Family name ribosomal protein s5/s2 family   suggest a name
Synonym(s) Plastid ribosomal
Cross-reference(s) PMID:
Proteomic characterization of the small subunit of Chlamydomonas reinhardtii chloroplast ribosome: identification of a novel S1 domain-containing protein and unusually large orthologs of bacterial S2, S3, and S5.
12417713
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
ribosomal protein s5/s2 family (plant-specificity: 30%)
GP001051 (288)
2
40S ribosomal protein S2 subfamily
GP017249 (137) ,
30S ribosomal protein S5 subfamily
GP020157 (78) ,
(plant-specificity: 19%)
GP020374 (71)
3 GP041902 (137) , GP045109 (78) ,
(plant-specificity: 19%)
GP045358 (71)
4 GP071340 (137) , GP074735 (78) , GP074982 (71)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
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    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 288
Species Count (w/o splice) Count (w/ splice)
3 3
5 5
48 48
9 13
3 3
15 15
4 4
9 9
11 11
8 8
4 4
5 8
4 6
3 3
5 5
5 8
8 9
4 4
5 5
4 4
3 3
8 8
5 5
3 3
8 18
4 4
6 9
4 4
8 8
5 6
12 12
6 6
4 4
4 4
4 4
9 10
5 5


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Ribosomal protein S5, eukaryotic/archaeal
IPR005711
Ribosomal protein S5, eukaryotic/archaeal Family 35 (100) Yes
Ribosomal protein S5, bacterial-type
IPR005712
Ribosomal protein S5, bacterial-type Family 16 (46) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Double-stranded RNA-binding domain
IPR014720
Double-stranded RNA-binding domain Domain 81 (233) No
Ribosomal protein S5 domain 2-type fold, subgroup
IPR014721
Ribosomal protein S5 domain 2-type fold, subgroup Domain 82 (236) No
Ribosomal protein S5 domain 2-type fold
IPR020568
Ribosomal protein S5 domain 2-type fold Domain 82 (235) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR014720
Ribosomal protein S5, N-terminal, conserved site
IPR018192
Ribosomal protein S5, C-terminal
IPR005324
Ribosomal protein S5, N-terminal
IPR013810 IPR020568 IPR014721 IPR005711



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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
288 258 (90%) 239 (83%) [50; 276; 692] ~293 1738 122


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
288 239 (83%) 1.39515 1.79854 1.04212



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