Family GP001175


Family ID GP001175  add to my list RDF
Family name Succinate dehydrogenase/fumarate reductase iron-sulphur family   suggest a name
Cross-reference(s) PMID:
Three different genes encode the iron-sulphur subunit of succinate dehydrogenase in Arabidopsis thaliana.
11442063 PMID:
Nuclear SDH2-1 and SDH2-2 genes, encoding the iron-sulfur subunit of mitochondrial complex II in Arabidopsis, have distinct cell-specific expression patterns and promoter activities.
15563621
Family Ontology
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molecular_function
electron carrier activity
GO:0009055 (37%) - electron carrier activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Succinate dehydrogenase/fumarate reductase iron-sulphur family (plant-specificity: 40%)
GP001175 (286)
2 GP016518 (171) ,
(plant-specificity: 60%)
GP022429 (52) ,
(plant-specificity: 25%)
GP109643 (28) ,
(plant-specificity: 100%)
GP110749 (12) ,
(plant-specificity: 100%)
GP026958 (11) ,
(plant-specificity: 100%)
GP112083 (7) , GP028387 (4) , GP116671 (2)
3 GP041153 (171) ,
(plant-specificity: 60%)
GP047647 (52) ,
(plant-specificity: 25%)
GP119436 (28) ,
(plant-specificity: 100%)
GP120875 (12) ,
(plant-specificity: 100%)
GP053467 (11) ,
(plant-specificity: 100%)
GP122872 (7) , GP055351 (4) , GP129658 (2)
4 GP070547 (170) ,
(plant-specificity: 66%)
GP081764 (41) ,
(plant-specificity: 25%)
GP132818 (28) ,
(plant-specificity: 100%)
GP134487 (12) ,
(plant-specificity: 100%)
GP084801 (11) ,
(plant-specificity: 16%)
GP135373 (9) ,
(plant-specificity: 100%)
GP137056 (7) , GP087207 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 286
Species Count (w/o splice) Count (w/ splice)
3 3
2 2
15 15
3 3
8 8
6 6
16 16
8 8
4 4
5 5
4 4
6 10
4 5
6 6
3 3
6 12
3 5
5 5
9 9
17 17
5 5
8 9
2 2
7 7
6 6
5 5
3 4
6 6
5 5
6 12
22 22
18 18
12 12
1 1
4 4
10 10
12 12


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Succinate dehydrogenase/fumarate reductase iron-sulphur protein
IPR004489
Succinate dehydrogenase/fumarate reductase iron-sulphur protein Family 36 (104) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR004489
Succinate dehydogenase/fumarate reductase N-terminal
IPR025192



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Species
Information to display
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(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
286 265 (93%) 162 (57%) [34; 164; 1008] ~189 1491 70