Family GP001625


Family ID GP001625  add to my list RDF
Family name Uroporphyrinogen decarboxylase family   suggest a name
Synonym(s) Urod , uroporphyrinogen iii decarboxylase family
Family Ontology
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molecular_function
uroporphyrinogen decarboxylase activity
GO:0004853 (43%) - uroporphyrinogen decarboxylase activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Uroporphyrinogen decarboxylase family (plant-specificity: 9%)
GP001625 (285)
2 GP016838 (174) , GP017777 (109) , GP027996 (4)
3 GP041478 (157) , GP042459 (106) , GP121810 (17) , GP054857 (4) , GP128344 (3)
4 GP070861 (156) , GP132457 (58) , GP132537 (48) , GP133514 (17) , GP086635 (4) , GP144590 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 285
Species Count (w/o splice) Count (w/ splice)
3 3
6 6
47 47
8 11
5 5
5 5
6 6
6 6
6 6
6 6
5 5
6 9
4 5
4 4
5 5
13 26
5 5
4 4
4 4
4 4
4 4
5 8
4 4
4 4
4 7
4 4
8 11
4 4
5 5
3 5
9 9
8 8
7 7
4 4
6 6
12 17
6 6


Information to display




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IPR Annotation Type % Occurence Specificity
Uroporphyrinogen decarboxylase (URO-D)
IPR000257
Uroporphyrinogen decarboxylase (URO-D) Domain 52 (147) No

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Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000257


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
285 248 (87%) 153 (54%) [55; 337; 1560] ~322 2810 182