Family GP001055


Family ID GP001055  add to my list RDF
Family name Mediator complex subunit Med28 family   suggest a name
Synonym(s) Probable Horizontal Gene Transfer from eudicot to the Parasitic Plant orobanche
Cross-reference(s) PMID:
A unified nomenclature for protein subunits of mediator complexes linking transcriptional regulators to RNA polymerase II.
15175151
Curation status ?
Found in Spermatophyta plant-specific
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Mediator complex subunit Med28 family (plant-specificity: 100%)
GP001055 (270)
2 GP016000 (270)
3 GP040680 (270)
4 GP070108 (262) ,
(plant-specificity: 100%)
GP139347 (5) , GP084041 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 270
Species Count (w/o splice) Count (w/ splice)
7 7
5 5
3 3
4 4
4 4
4 4
5 5
4 4
6 6
10 10
3 3
7 7
13 13
15 18
6 6
22 29
9 9
9 9
11 12
17 17
12 12
13 13
9 9
15 16
23 29
16 16


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema



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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
270 252 (93%) 209 (77%) [78; 669; 1487] ~594 2543 464