Gene AT5G66110.1


Sequence ID AT5G66110.1  add to my list
Species Arabidopsis thaliana
Alias Q67ZW1
Length 147aa
PubMed References
Open Display PubMed Reference(s) (6)
Accession Description
Structural analysis of Arabidopsis thaliana chromosome 5. V. Sequence features of the regions of 1,381,565 bp covered by twenty one physically assigned P1 and TAC clones.
9679202 		Structural analysis of Arabidopsis thaliana chromosome 5. V. Sequence features of the regions of 1,381,565 bp covered by twenty one physically assigned P1 and TAC clones.
Stress induced and nuclear localized HIPP26 from Arabidopsis thaliana interacts via its heavy metal associated domain with the drought stress related zinc finger transcription factor ATHB29.
18974936 		Stress induced and nuclear localized HIPP26 from Arabidopsis thaliana interacts via its heavy metal associated domain with the drought stress related zinc finger transcription factor ATHB29.
Metallochaperone-like genes in Arabidopsis thaliana.
21072340 		Metallochaperone-like genes in Arabidopsis thaliana.
Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.
27862469 		Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.
Heavy metal-associated isoprenylated plant protein (HIPP): characterization of a family of proteins exclusive to plants.
23368984 		Heavy metal-associated isoprenylated plant protein (HIPP): characterization of a family of proteins exclusive to plants.
UBIQUITIN-SPECIFIC PROTEASE16 interacts with a HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN27 and modulates cadmium tolerance.
23857362 		UBIQUITIN-SPECIFIC PROTEASE16 interacts with a HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN27 and modulates cadmium tolerance.
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 147 amino acids

>AT5G66110.1_ARATH
MGFRDICYRKHHKKLKQFQKVEIKVKMDCEGCERRVRKSVEGMKGVSKVTVDPKQSKLTV
EGFVQPSKVVHRVMHRTGKKAELWPYVPYEVVPHPYAPGAYDKKAPPGYVRNALADPLVA
PLARASSFEVKYTSAFSDDNPNACTIM




Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397		 Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP463617 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for AT5G66110.1



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Cg1g001350.1 orthology 0.442 8 219.5 1.3e-57
Cm173610.1 orthology 0.436 7 229.9 1.6e-60
Cm280940.1 orthology 0.436 7 228 4.08e-78
Cs1g25820.1 orthology 0.436 8 224.6 4.3e-59
MELO3C007926.2.1 orthology 0.324 3 219.9 8.9e-58
Manes.01G148900.1 orthology 0.385 3 209.5 1.6e-54
brana_pan_p030902 orthology 0.0467 3 240 2.64e-83
braol_pan_p039277 orthology 0.0385 2 242 4.13e-84
brarr_pan_p021369 orthology 0.0467 3 240 2.13e-83
cucsa_pan_p018650 orthology 0.325 3 217 7.64e-74
maldo_pan_p003753 orthology 0.377 5 205 2.39e-69
medtr_pan_p005386 orthology 0.52 7 219 1.93e-74
thecc_pan_p011891 orthology 0.448 7 218 2.06e-74